The effect of the N-linked glycans on structural features and physicochemical functions of soybean β-conglycinin homotrimers

β-Conglycinin is a trimeric protein consisting of three subunits, α,α′,and β, which are N-glycosylated. The α and α′ subunits contain extension regions in addition to core regions common to all subunits. We purified homogeneous trimers consisting of only α, α′, or β from mutant soybean cultivars containing β-conglycinin lacking one or two subunits: α homotrimers from an α′-lacking mutant, α′ homotrimers from an α-lacking mutant, and β homotrimers from an α-and α′-lacking mutant. Structural features and physicochemical functions of the three homotrimers were examined and compared with those of recombinant homotrimers having no N-linked glycans. The native homotrimers have secondary structures very similar to those of the recombinant ones. In analogy with the recombinant homotrimers, the native ones exhibit different thermal stabilities from one another (β>α′>α), and the native α and α′ homotrimers exhibit better solubility, emulsifying ability, and heat-induced association than the native β homotrimer. Further, the N-linked glycans contribute to solubilities of the three subunits at low ionic strength (μ=0.08) and to the emulsifying ability of the native β homotrimer. N-Linked glycans also prevent heat-induced associations of the native α and α′ homotrimers but do not contribute to the secondary structure and the thermal stability of β-conglycinin.     

Unique molecular aggregation of novel naphthalocyanine (near IR absorbing dye)

A series of organic-soluble naphthalocyanine derivatives (Y_mMNcX₄) have been synthesized. Their spectroscopic properties in organic solutions and in thin films were studied. MNcX₄ such as MNc(t-Bu)₄ (5a-5c) and MNc(On-Bu)₄ (5j) formed H-aggregates even in dilute solutions. MNc(CO₂R')₄ (5d-5i) had much stronger H-aggregation properties compared with those ofMNc(t-Bu)₄ and MNc(On-Bu)₄. Especially, MNc(CO₂R')₇ complexes (M=Cu, Pd and Ni) existed exclusively without monomers in the aggregated state even in highly dilute solutions. MNcX₄, which has strong H-aggregation properties, showed merely H- aggregate absorption maxima in thin films. In contrast, Y₂MNcX₄ (4), which has sterically hindered Y groups, showed monomerically pure characteristics in solution. However, thin films of Y₂MNcX₄ have a J-type molecular arrangement, exhibiting a red shift of Q-band absorption. The monomeric properties of Y₂MNcX₄ in solutions and J-type molecular arrangement in thin films arise from steric hindrance of two Y groups, such as R₃SiO-in Y₂MNcX₄, which prevents strong H-aggregation of naphthalocyanine.     

Effects of amino acid replacements around the reactive site of chicken ovomucoid domain 3 on the inhibitory activity toward chymotrypsin and trypsin

We have previously shown that replacing the P1-site residue(Ala) of chicken ovomucoid domain 3 (OMCHI3) with a Met or Lysresults in the acquisition of inhibitory activity toward chymotrypsinor trypsin, respectively. However, the inhibitory activitiesthus induced are not strong. In the present study, we introducedadditional amino acid replacements around the reactive siteto try to make the P1-site mutants more effective inhibitorsof chymotrypsin or trypsin. The amino acid replacement AspTyrat the P2' site of OMCHI3(P1Met) resulted in conversion to a35000-fold more effective inhibitor of chymotrypsin with aninhibitor constant (K_i) of 1.17x10^–11 M. The K_i valueof OMCHI3(P1Met, P2'Ala) indicated that the effect on the interactionwith chymotrypsin of removing a negative charge from the P2'site was greater than that of introducing an aromatic ring.Similarly, enhanced inhibition of trypsin was observed whenthe AspTyr replacement was introduced into the P2' site of OMCHI3(P1Lys).Two additional replacements, AspAla at the P4 site and ArgAlaat the P3' site, made the mutant a more effective inhibitorof trypsin with a K_i value of 1.44x10^–9 M. By contrast,ArgAla replacement at the P3' site of OMCHI3(P1Met, P2'Tyr)resulted in a greatly reduced inhibition of chymotrypsin, andAspAla replacement at the P4 site produced only a small changewhen compared with a natural variant of OMCHI3. These resultsclearly indicate that not only the P1-site residue but alsothe characteristics, particularly the electrostatic properties,of the amino acid residues around the reactive site of the proteaseinhibitor determine the strength of its interactions with proteases.Furthermore, amino acids with different characteristics arerequired around the reactive site for strong inhibition of chymotrypsinand trypsin.     

Activation energy for superplastic flow in aluminum matrix composites exhibiting high-strain-rate superplasticity

The activation energy for superplastic flow in a variety of Si₃N₄/Al composites exhibiting high-strain-rate superplasticity was analyzed. The activation energy in a solid state including no liquid was in agreement with the one for lattice self-diffusion. However, the activation energy was increased by the presence of a liquid phase. The behaviors of the Al-Cu-Mg(2124) alloy composites were different from those of the Al-Mg(5052), AI-Mg-Si(6061) and Al-Zn-Mg(7064) alloy composites. This is probably because partial melting occurred at a temperature lower than the apparent partial melting temperature determined by the DSC investigation, however, the volume of liquid was too small to be measured by the DSC investigations for the Al-Cu-Mg composites.     

Evolution of patinas on copper exposed in a suburban area

Copper plates were exposed under sheltered outdoor conditions for up to one year, starting in September 2001 in Musashino City, Tokyo, a suburban area. Following various periods of exposure, the patinas on the plates were characterized to investigate their evolution by using X-ray fluorescence analysis, X-ray diffraction, field emission scanning electron microscopy, and glow discharge optical emission spectroscopy. The difference in the roles of sulfur and chlorine in the early stages of copper patination were identified by analyzing the depth profiles of these two elements. Sulfur was found on top of the patina as cupric sulfates such as posnjakite (Cu₄SO₄(OH)₆ · H₂O) or brochantite (Cu₄SO₄(OH)₆). Brochantite appeared only after 12 months of exposure. In contrast, chlorine was found on the surface after only one month of exposure. It gradually penetrated the patina as the exposure period lengthened, forming copper chloride complexes. Chloride ions accumulated at the patina/copper interface, forming nantokite (CuCl), which promoted corrosion.     

Differences between corrosion products formed on copper exposed in Tokyo in summer and winter

We analyzed the copper corrosion products that formed during a month in summer and a month in winter at three sites in Tokyo using several analytical techniques. The X-ray diffraction patterns revealed that cuprite Cu₂O and posnjakite Cu₄SO₄(OH)₆·H₂O formed on copper exposed in summer. By contrast, only cuprite was found in winter exposed copper. The X-ray fluorescence results indicated that the amounts of sulfur and chlorine on the copper plates exposed in summer were much greater than those in winter. This could be explained by the change in particulate sulfate and sea salt concentrations. Depth profiling analysis by Auger electron spectroscopy revealed that the oxide layer formed in summer was thicker than that in winter. This difference in oxide layer thickness could have been due to the differences in temperature, relative humidity, and the amount of sulfur and chlorine on the copper plate.     

Effect of strain rate on compressive behavior of a Pd40Ni40P20 bulk metallic glass

Mechanical deformation of Pd₄₀Ni₄₀P₂₀ was characterized in compression over a wide strain rate range (3.3×10⁻⁵ to 2×10³ s⁻¹) at room temperature. The compression sample fractured with a shear plane inclined 42 degree with respect to the loading axis, in contrast to 56 degree for the case of tension. This suggests the yielding of the material deviates from the classical von Mises yield criterion, but follows the Mohr-Coulomb yield criterion. Fracture stress as well as strain was found to decrease with increasing applied strain rate. The compressive stress (1.74 GPa) was also found to be higher than the tensile fracture stress at a quasi-static strain rate. Close examination of the stress–strain curves revealed that localized shear might have occurred at a compressive stress of about 1.4 GPa, much lower than the “apparent” yield stress of 1.74 GPa. However, the stress of 1.4 GPa for shear band initiation is almost the same as the fracture stress measured at a dynamic strain rate of 5×10² s⁻¹. These results suggested that the fracture of a bulk metallic glass is sensitive to the applied loading rate.     

A low wall-loading DEMO reactor design with high priority for early and reliable realization of a tokamak fusion reactor over the cost performance

Based on scientific databases adopted for designing ITER plasmas and on the advancement of fusion nuclear technology from the recent R&D program, a low wall-loading DEMO fusion reactor has been designed, where high priority has been given to the early and reliable realization of a tokamak fusion plasma over the cost performance. Since the major radius of this DEMO reactor is chosen to be 10 m, plasma ignition is achievable with a low fusion power of 0.8 GW and an operation period of 4–5 hours is available only with inductive current drive. The low ignition power makes it possible to adopt a first wall with an austenitic stainless steel, for which significant databases and operating experience exists, due to its use in the presence of neutron irradiation in fission reactors. In step with development of advanced materials, a step-wise increase of the fusion power seems to be feasible and realistic, because this DEMO reactor has the potential to produce a fusion power of 5 GW.     

Reduction of system matrices of planar beam in ANCF by component mode synthesis method

A method of reducing the system matrices of a planar flexible beam described by an absolute nodal coordinate formulation (ANCF) is presented. In this method, we focus that the bending stiffness matrix expressed by adopting a continuum mechanics approach to the ANCF beam element is constant when the axial strain is not very large. This feature allows to apply the Craig–Bampton method to the equation of motion that is composed of the independent coordinates when the constraint forces are eliminated. Four numerical examples that compare the proposed method and the conventional ANCF are demonstrated to verify the performance and accuracy of the proposed method. From these examples, it is verified that the proposed method can describe the large deformation effects such as dynamic stiffening due to the centrifugal force, as well as the conventional ANCF does. The use of this method also reduces the computing time, while maintaining an acceptable degree of accuracy for the expression characteristics of the conventional ANCF when the modal truncation number is adequately employed. This reduction in CPU time particularly pronounced in the case of a large element number and small modal truncation number; the reduction can be verified not only in the case of small deformation but also in the case of a fair bit large deformation.     

Freestream and vortex preservation properties of high-order WENO and WCNS on curvilinear grids

Freestream and vortex preservation properties of a weighted essentially nonoscillatory scheme (WENO) and a weighted compact nonlinear scheme (WCNS) on curvilinear grids are investigated. While the numerical technique used for the compact difference scheme can be applied to WCNS, applying it to WENO is difficult. This difference is caused by difference in the formulation of numerical fluxes. WENO computed in the generalized coordinate system does not work well for either freestream or vortex preservation, whereas WENO computed in the Cartesian coordinate system works well for both freestream and vortex preservation, but its resolution is lower than that of WCNS. In addition, WENO in the Cartesian coordinate system costs three times as much as WENO or WCNS in the generalized coordinate system. Therefore, WENO in the Cartesian coordinate system is not suitable for solving Euler equations on a curvilinear grid. On the other hand, WCNS computed in the generalized coordinate system works well for freestream and vortex preservation when used with the numerical technique proposed for the compact difference scheme. The results show that WCNS with this numerical technique can be used for an arbitrary grid system. In this paper, the excellent freestream and vortex preservation properties of WCNS when used with the numerical technique, compared with those of WENO, are shown for the first time.